| Middletown and New Jersey Railroad (MNJ) | Operations | 41.44736 | -74.422 | 5 |
| Finger Lakes Railway (FGLK) | Auburn Line | 42.92305 | -76.58417 | 22 |
| Vermont Railway (VTR) | B and R Subdivision | 43.29028 | -73.31145 | 25 |
| CSX Transportation (CSXT) | Baldwinsville Subdivision | 43.25811 | -76.37871 | 17 |
| Metro-North Commuter Railroad (MNCW) | Beacon Line | 41.46546 | -73.75485 | 15 |
| CSX Transportation (CSXT) | Belt Subdivision | 42.88991 | -78.79725 | 4 |
| CSX Transportation (CSXT) | Berkshire Subdivision | 42.45128 | -73.59829 | 10 |
| Norfolk Southern Railway (NS) | Binghamton Yard | 42.1044 | -75.90392 | 0.5 |
| Norfolk Southern Railway (NS) | Buffalo Consolidated Terminal | 42.88645 | -78.87837 | 5 |
| CSX Transportation (CSXT) | Buffalo Terminal Subdivision | 42.86764 | -78.84371 | 5 |
| Canadian Pacific Railway (CPR) | Canadian Subdivision | 44.08541 | -73.56797 | 50 |
| Finger Lakes Railway (FGLK) | Canandaigua Line | 42.89879 | -77.21823 | 13 |
| CSX Transportation (CSXT) | Carman Subdivision | 42.71546 | -73.82788 | 5 |
| CSX Transportation (CSXT) | Castleton Subdivision | 42.52852 | -73.8011 | 2 |
| Canadian Pacific Railway (CPR) | Colonie Subdivision | 42.87944 | -73.67932 | 15 |
| Norfolk Southern Railway (NS) | Corning Secondary | 42.5994 | -77.40769 | 37 |
| Amtrak (AMTK) | Empire Connection Line | 40.81756 | -73.96162 | 5 |
| CSX Transportation (CSXT) | Erie West Subdivision | 42.7582 | -78.81643 | 15 |
| CSX Transportation (CSXT) | Fair Grounds Subdivision | 42.95331 | -76.1892 | 10 |
| Norfolk Southern Railway (NS) | Freight Line | 42.48607 | -74.94126 | 60 |
| CSX Transportation (CSXT) | Fulton Subdivision | 43.38453 | -76.45062 | 10 |
| Metro-North Commuter Railroad (MNCW) | Grand Central Terminal | 40.7526 | -73.97715 | 1 |
| Metro-North Commuter Railroad (MNCW) | Harlem Line | 41.16304 | -73.70079 | 29 |
| Finger Lakes Railway (FGLK) | Himrod Line | 42.5214 | -76.97032 | 12 |
| Metro-North Commuter Railroad (MNCW) | Hudson Line | 41.2519 | -73.94524 | 35 |
| Amtrak (AMTK) | Hudson Line | 42.23295 | -73.80967 | 35 |
| Middletown and New Jersey Railroad (MNJ) | Hudson Secondary | 41.35769 | -74.3124 | 8 |
| CSX Transportation (CSXT) | Hudson Subdivision | 42.21001 | -73.83164 | 40 |
| Norfolk Southern Railway (NS) | Lake Erie District | 42.58049 | -79.14053 | 45 |
| Norfolk Southern Railway (NS) | Lehigh Secondary | 41.74616 | -76.30779 | 22 |
| CSX Transportation (CSXT) | Lockport Subdivision | 43.17359 | -78.68496 | 10 |
| Amtrak (AMTK) | Main Line | 40.7982 | -73.90591 | 10 |
| CSX Transportation (CSXT) | Mohawk Subdivision | 43.09878 | -75.19395 | 50 |
| Metro-North Commuter Railroad (MNCW) | New Haven Line | 41.11847 | -73.40867 | 25 |
| CSX Transportation (CSXT) | Niagara Subdivision | 43.05173 | -78.7545 | 25 |
| New York, Susquehanna and Western Railway (NYSW) | Northern Division | 42.53376 | -75.96123 | 35 |
| CSX Transportation (CSXT) | Oak Point Link/Yard | 40.81199 | -73.89802 | 1 |
| Buffalo Southern Railroad (BSOR) | Operations | 42.67 | -78.85933 | 17 |
| New York New Jersey Rail (NYNJ) | Operations | 40.62606 | -74.04464 | 3 |
| Ontario Midland Railroad (OMID) | Operations | 43.2301 | -77.0681 | 25 |
| Western New York and Pennsylvania Railroad (WNYP) | Operations | 42.08034 | -78.42953 | 50 |
| Rochester and Southern Railroad (RSR) | Operations | 42.923 | -77.749 | 20 |
| Ithaca Central Railroad (ITHR) | Operations | 42.19439 | -76.52752 | 18 |
| Depew, Lancaster and Western Railroad (DLWR) | Operations | 42.91766 | -78.7907 | 6 |
| Falls Road Railroad (FRR) | Operations | 43.235 | -78.171 | 25 |
| South Brooklyn Railway (SBK) | Operations | 40.65587 | -73.94461 | 6 |
| Owego and Harford Railway (OHRY) | Operations | 42.10814 | -76.268 | 12 |
| Central New York Railroad (CNYK) | Operations | 41.64193 | -75.01816 | 55 |
| Staten Island Railway (SIR) | Operations | 40.58082 | -74.15472 | 7 |
| Adirondack Railroad (ADIX) | Operations | 43.70007 | -75.00184 | 50 |
| Berkshire and Eastern Railroad (BERX) | Operations | 42.877 | -73.484 | 15 |
| Catskill Mountain Railroad (CMRR) | Operations | 42.02301 | -74.38499 | 25 |
| Delaware and Ulster Railroad (DURR) | Operations | 42.25439 | -74.6928 | 13 |
| Long Island Rail Road (LI) | Operations | 40.835 | -73.135 | 71.89 |
| New York and Atlantic Railway (NYA) | Operations | 40.28141 | -72.74949 | 65 |
| Mohawk, Adirondack and Northern Railroad (MHWA) | Operations | 43.7588 | -75.14253 | 55 |
| Buffalo and Pittsburgh Railroad (BPRR) | Operations | 42.15709 | -78.72056 | 10 |
| Batten Kill Railroad (BKRR) | Operations | 42.9481 | -73.37607 | 5 |
| New York and Lake Erie Railroad (NYLE) | Operations | 42.26 | -78.69 | 27 |
| Finger Lakes Railway (FGLK) | Operations | 42.93337 | -76.68054 | 60 |
| Livonia, Avon and Lakeville Railroad (LAL) | Operations | 43.00711 | -77.66461 | 12 |
| Metro-North Commuter Railroad (MNCW) | Pascack Valley Line | 41.08675 | -74.02796 | 3 |
| Amtrak (AMTK) | Pennsylvania Station | 40.75059 | -73.9932 | 1 |
| CSX Transportation (CSXT) | Port Subdivision | 42.50841 | -73.77513 | 4 |
| Amtrak (AMTK) | Post Road Subdivision | 42.48296 | -73.67338 | 7 |
| Amtrak (AMTK) | Regional MOW | 40.90438 | -73.97402 | 25 |
| Amtrak (AMTK) | Rensselaer Station | 42.64699 | -73.74046 | 3 |
| CSX Transportation (CSXT) | River Subdivision | 41.72808 | -73.99094 | 55 |
| Amtrak (AMTK) | Rochester Station | 43.16333 | -77.60812 | 0.25 |
| CSX Transportation (CSXT) | Rochester Subdivision | 43.20297 | -77.60544 | 73 |
| CSX Transportation (CSXT) | Selkirk Subdivision | 42.78173 | -73.97732 | 16 |
| CSX Transportation (CSXT) | Selkirk Yard | 42.55491 | -73.83802 | 2 |
| CSX Transportation (CSXT) | Somerset RR Subdivision | 43.27166 | -78.65338 | 8 |
| Norfolk Southern Railway (NS) | Southern Tier Line | 42.34819 | -77.47361 | 75 |
| Metro-North Commuter Railroad (MNCW) | Southern Tier Line (Port Jervis Line) | 41.35629 | -74.2973 | 20 |
| CSX Transportation (CSXT) | St Lawrence Subdivision | 43.91728 | -75.27437 | 75 |
| Norfolk Southern Railway (NS) | Sunbury Line | 41.74447 | -75.72678 | 27 |
| Amtrak (AMTK) | Sunnyside Yard | 40.74775 | -73.93239 | 1 |
| CSX Transportation (CSXT) | Syracuse Terminal Subdivision | 43.17093 | -75.82017 | 25 |
| Metro-North Commuter Railroad (MNCW) | Systemwide | 40.95688 | -73.51853 | 35 |
| CSX Transportation (CSXT) | West Shore Subdivision | 43.15891 | -77.61094 | 5 |
